The Chosen One

The Chosen One is a significant trope in SF, and it's usually male.

Female Chosen One

The Chosen One ... is female.

Including works where a woman fulfills a prophecy, religious or heroic, or otherwise.

• "Anamnesis" (Millennium episode 2x19) - a teenage girl who is having visions of the Magdalene, or the Virgin Mary
• Gorman Bechard. The Second Greatest Story Ever Told (1991). God's latest kid is a girl.
• Isobelle Carmody, Obernewtyn - Elspeth Gordie has a destiny ....
• Suzette Haden Elgin Star Anchored, Star Angered - Drussa Silver is a messiah figure.
• Elizabeth Hand Waking the Moon
• Elizabeth Haydon Rhapsody
• Elizabeth Haydon Prophecy
• P. C. Hodgell Godstalk series: Godstalk, Dark of the Moon, Seeker's Mask - protagonist is one of a trinity; female is The Destroyer of the trinity
• Elizabeth Kerner, Song in the Silence
• Ursula K. Le Guin The Tombs of Atuan. Tenar, the protagonist, is The Eaten One, discovered via a Dalai Lama like search.
• James Morrow Only Begotten Daughter. Another sequel to The New Testament, with a daughter. Deeply satirical.
• Andre Norton and Sasha Miller. To the King a Daughter (2000)
• Andre Norton and Mercedes Lackey. Elvenbane and Elvenblood
• Midori Snyder New Moon (1989)
• Midori Snyder Sadar's Keep (1991)
• Midori Snyder Beldan's Fire (1993) (a quartet of novels about 4 women who fulfill a religio-political prophecy & free their people)
• Sheri S. Tepper Singer from the Sea
• Jane Yolen Sister Light Sister Dark

• Sydney Bristow, "Alias" (term "chosen one" used in episode 3x11 "Full Disclosure"
• Whale Rider (2002)

other possible suggestions

• Gael Baudino -- some of her works, surely?
• Clemen, James. WIT'CH series
• Nicola Griffith Ammonite
• Horwood, William. Second Duncton Wood series: Duncton Tales, Duncton Rising, Duncton Stone. But Privet doesn't fulfill a prophecy.
• Robin McKinley The Blue Sword
• Elizabeth Moon Paksennarion - fulfills a prophecy?
• Terry Pratchett Equal Rites -- the 8th son of an 8th son turns out to be a daughter ... not exactly prophecied ...
• Elizabeth Scarborough